Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PRAD | rs12929716 | chr16:5006600 | A/G | 0.000152 | 483 | 31.27 | 29.95 | 26.37 | KM Plot |
| PRAD | rs12933647 | chr16:5004370 | A/G | 4.9E-5 | 479 | 31.43 | 29.63 | 26.37 | KM Plot |
| PRAD | rs12933662 | chr16:5004405 | A/G | 4.9E-5 | 479 | 31.43 | 29.63 | 26.37 | KM Plot |
| PRAD | rs12938589 | chr17:62986362 | A/C | 7.89E-9 | 489 | 30.8 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12938666 | chr17:62986440 | A/G | 7.89E-9 | 489 | 30.8 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12938922 | chr17:62986501 | A/T | 7.89E-9 | 489 | 30.8 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12939726 | chr17:62986511 | G/A | 8.29E-9 | 488 | 30.8 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12941242 | chr17:62986463 | T/C | 7.89E-9 | 489 | 30.8 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12941507 | chr17:62986561 | T/C | 7.89E-9 | 489 | 30.8 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12944772 | chr17:62990951 | A/G | 9.33E-9 | 483 | 30.93 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12945457 | chr17:62983931 | A/G | 1.22E-8 | 481 | 30.8 | 31.62 | 19.63 | KM Plot |
| PRAD | rs12946305 | chr17:62984099 | C/T | 1.2E-8 | 482 | 30.8 | 31.62 | 19.63 | KM Plot |
| PRAD | rs12948418 | chr17:62978912 | A/T | 8.32E-9 | 490 | 30.78 | 31.37 | 19.63 | KM Plot |
| PRAD | rs12948710 | chr17:62978981 | A/G | 8.78E-9 | 490 | 30.8 | 31.33 | 19.63 | KM Plot |
| PRAD | rs12953318 | chr17:62990240 | A/G | 8.72E-9 | 484 | 30.97 | 31.37 | 19.63 | KM Plot |